STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rta_07310Sugar phosphate isomerase/epimerase-like protein. (335 aa)    
Predicted Functional Partners:
Rta_07320
Conserved hypothetical oxidoreductase.
 
  
 0.973
Rta_07300
Candidate Ribose/xylose/arabinose/galactoside ABC type transport system, periplasmic component.
 
    0.865
Rta_07340
N-acetylmannosamine kinase(ManNAc kinase)-like protein.
 
   
 0.812
Rta_07270
Glucokinase-like protein.
 
   
 0.792
Rta_07330
Hypothetical protein.
       0.771
Rta_07290
Candidate Ribose/xylose/arabinose/galactoside ABC type transport system, permease component.
 
    0.733
Rta_07280
Candidate Ribose/xylose/arabinose/galactoside ABC type transport system, ATP-binding component with duplicated domains.
  
    0.654
Rta_23750
Conserved hypothetical protein.
 
  
 0.636
Rta_16010
Oxidoreductases-like protein.
 
  
 0.582
Rta_29990
Conserved hypothetical protein.
 
  
 0.569
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.