Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_07320Conserved hypothetical oxidoreductase. (388 aa)    
Predicted Functional Partners:
Rta_07310
Sugar phosphate isomerase/epimerase-like protein.
 
  
 0.957
Rta_07300
Candidate Ribose/xylose/arabinose/galactoside ABC type transport system, periplasmic component.
 
  
 0.886
Rta_07340
N-acetylmannosamine kinase(ManNAc kinase)-like protein.
 
   
 0.813
Rta_07330
Hypothetical protein.
       0.768
Rta_07290
Candidate Ribose/xylose/arabinose/galactoside ABC type transport system, permease component.
 
    0.748
Rta_07270
Glucokinase-like protein.
 
   
 0.742
Rta_07280
Candidate Ribose/xylose/arabinose/galactoside ABC type transport system, ATP-binding component with duplicated domains.
 
  
 0.710
lysU
Candidate lysyl-tRNA synthetase (Lysine--tRNA ligase); Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.557
Rta_17700
Transcriptional regulator, LacI family-like protein.
 
   
 0.465
Rta_29990
Conserved hypothetical protein.
  
     0.448
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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