Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_07430Peptidoglycan lytic transglycosylase, Glycoside Hydrolase Family 23-like protein. (665 aa)    
Predicted Functional Partners:
Rta_07420
Candidate membrane protein.
       0.778
Rta_07440
Conserved hypothetical protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.674
Rta_28650
HemY protein-like protein.
  
     0.653
Rta_15330
Peptidoglycan lytic transglycosylase, Glycoside Hydrolase Family 23-like protein.
  
   
 0.592
Rta_07450
Conserved hypothetical protein.
     
 0.557
Rta_23460
Candidate membrane protein.
  
    0.557
Rta_09890
Exoribonuclease R-like protein.
 
     0.519
Rta_24410
Conserved hypothetical protein.
 
   
 0.518
Rta_07950
Penicillin-binding protein 1A; Candidate bifunctional family GT51 b-glycosyltransferase/PBP transpeptidase (candidate murein polymerase), Glycosyltransferase Family 51.
 
   
 0.461
pbp2
Candidate cell division penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall.
 
  
 0.459
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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