Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_07550Candidate ABC type branched chain amino acid transport system, periplasmic component. (432 aa)    
Predicted Functional Partners:
Rta_07610
Candidate ABC type branched chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.935
Rta_07600
Candidate ABC type branched chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.927
Rta_07580
Candidate ABC type branched chain amino acid transport system, ATP-binding component.
 
  
 0.915
Rta_07540
Conserved hypothetical protein.
 
   
 0.914
Rta_07570
Hypothetical protein.
 
     0.914
Rta_07590
Candidate ABC type branched chain amino acid transport system, ATP-binding component.
 
  
 0.884
Rta_07560
Conserved hypothetical protein.
 
     0.879
Rta_31600
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.780
Rta_31610
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.770
Rta_12260
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.747
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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