Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_07680Candidate beta-carotene hydroxylase. (171 aa)    
Predicted Functional Partners:
Rta_07690
Candidate beta-carotene ketolase (Beta-carotene oxygenase).
 
 
 0.985
Rta_07720
Candidate Lycopene cyclase.
 
  
 0.980
Rta_07730
Candidate zeaxanthin b-glucosyltransferase, Glycosyltransferase Family 1; Belongs to the UDP-glycosyltransferase family.
  
  
 0.969
Rta_07700
Candidate phytoene synthase.
 
 
 0.815
Rta_07710
Candidate phytoene dehydrogenase (Phytoene desaturase).
 
   
 0.783
Rta_07670
Conserved hypothetical protein.
 
     0.695
Rta_11850
Disulfide oxidoreductase-like protein.
  
   
 0.663
Rta_07660
Hypothetical protein.
 
     0.662
Rta_07640
Hypothetical protein.
 
     0.637
sodC
Candidate superoxide dismutase [Cu, Zn], precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
  
  
 0.634
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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