Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Rta_07700Candidate phytoene synthase. (310 aa)    
Predicted Functional Partners:
Rta_07710
Candidate phytoene dehydrogenase (Phytoene desaturase).
 
 
 0.997
Rta_07720
Candidate Lycopene cyclase.
 
  
 0.956
Rta_15730
Phytoene synthase-like protein.
  
  
 
0.925
Rta_29130
Trans-hexaprenyltranstransferase (All-trans-heptaprenyl-diphosphate synthase)-like protein; (Heptaprenyl diphosphate synthase) (Heptaprenyl pyrophosphate synthetase); Belongs to the FPP/GGPP synthase family.
  
 0.891
Rta_13090
Geranyltranstransferase (Farnesyl-diphosphate synthase)-like protein; (Farnesyl pyrophosphate synthetase) (Farnesyl diphosphate synthetase) (FPP synthetase); Belongs to the FPP/GGPP synthase family.
  
 0.890
Rta_07730
Candidate zeaxanthin b-glucosyltransferase, Glycosyltransferase Family 1; Belongs to the UDP-glycosyltransferase family.
 
   
 0.864
uppS
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.820
Rta_07680
Candidate beta-carotene hydroxylase.
 
 
 0.815
Rta_07740
Farnesyltranstransferase (Geranylgeranyl-diphosphate synthase)-like protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.731
gapA
Candidate glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.679
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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