Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
Rta_07710Candidate phytoene dehydrogenase (Phytoene desaturase). (495 aa)    
Predicted Functional Partners:
Rta_07700
Candidate phytoene synthase.
 
 
 0.997
Rta_07720
Candidate Lycopene cyclase.
 
 
 0.996
Rta_15730
Phytoene synthase-like protein.
 
 
 0.983
Rta_07730
Candidate zeaxanthin b-glucosyltransferase, Glycosyltransferase Family 1; Belongs to the UDP-glycosyltransferase family.
 
   
 0.875
Rta_15740
Phytoene synthase-like protein.
 
  
 0.803
Rta_07680
Candidate beta-carotene hydroxylase.
 
   
 0.783
Rta_26150
Conserved hypothetical protein.
  
 
 0.658
Rta_07740
Farnesyltranstransferase (Geranylgeranyl-diphosphate synthase)-like protein; Belongs to the FPP/GGPP synthase family.
  
  
 0.634
Rta_03800
Carotene 7,8-desaturase (zeta-carotene desaturase)-like protein.
 
   
 0.462
phrB
Candidate deoxyribodipyrimidine photolyase (photoreactivating enzyme); Belongs to the DNA photolyase family.
 
  
 0.459
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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