Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_07720Candidate Lycopene cyclase. (398 aa)    
Predicted Functional Partners:
Rta_07710
Candidate phytoene dehydrogenase (Phytoene desaturase).
 
 
 0.996
Rta_07680
Candidate beta-carotene hydroxylase.
 
  
 0.980
Rta_07700
Candidate phytoene synthase.
 
  
 0.956
Rta_07690
Candidate beta-carotene ketolase (Beta-carotene oxygenase).
 
 
 0.937
Rta_07730
Candidate zeaxanthin b-glucosyltransferase, Glycosyltransferase Family 1; Belongs to the UDP-glycosyltransferase family.
 
   
 0.869
Rta_07740
Farnesyltranstransferase (Geranylgeranyl-diphosphate synthase)-like protein; Belongs to the FPP/GGPP synthase family.
 
 
 0.681
Rta_25190
Candidate electron transfer flavoprotein beta-subunit (Electron transfer flavoprotein small subunit).
  
 
 0.576
Rta_14720
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.545
Rta_25180
Candidate electron transfer flavoprotein alpha-subunit (Electron transfer flavoprotein large subunit).
  
 
 0.456
Rta_15730
Phytoene synthase-like protein.
 
  
 0.450
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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