Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_07790Conserved hypothetical protein. (375 aa)    
Predicted Functional Partners:
Rta_07780
ATP-dependent DNA ligase-like protein.
 
     0.536
Rta_07800
Hypothetical protein.
       0.508
Rta_12910
Glycine-rich protein-like protein.
  
     0.485
nnrD
Conserved hypothetical protein; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
  
    0.466
katE
Candidate hydroperoxidase II.
  
  
 0.449
katE-3
Candidate hydroperoxidase II; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.449
Rta_07770
Phosphoglycerate mutase-like protein; Belongs to the phosphoglycerate mutase family.
       0.445
Rta_10640
Conserved hypothetical protein.
   
  
 0.441
topB
Candidate type IB DNA topoisomerase.
 
    0.436
bfr
Candidate bacterioferritin; Iron-storage protein.
   
  
 0.432
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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