Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_07820Candidate amino acid permease. (483 aa)    
Predicted Functional Partners:
Rta_07830
Conserved hypothetical protein.
 
     0.915
Rta_27530
Conserved hypothetical protein.
 
     0.741
Rta_27000
Conserved hypothetical protein.
  
     0.732
Rta_07810
Signal peptide protein-like protein.
       0.500
Rta_13670
Candidate bifunctional protein: chorismate mutase; prephenate dehydratase.
   
 
 0.499
arcB
Candidate ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
  
  
 0.468
Rta_30420
MelG protein (non-ribosomal peptide synthetase)-like protein.
  
 
 0.465
gltB
Candidate Ferredoxin-dependent glutamate synthase.
  
  
 0.432
Rta_28890
Candidate cation transport ATPase.
     
 0.432
Rta_19500
Arginine/lysine/ornithine decarboxylases-like protein.
  
  
 0.428
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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