Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilNCandidate Tfp pilus assembly protein PilN. (204 aa)    
Predicted Functional Partners:
pilM
Candidate type IV pilus assembly protein.
 
 
 0.998
pilO
Candidate Tfp pilus assembly protein PilO.
 
 
 0.996
pilQ
Candidate Fimbrial assembly protein pilQ precursor, secretin family.
 
 
 0.996
pilP
Candidate type IV pilus assembly protein PilP, putative lipoprotein of the pilotin family.
 
  
 0.994
Rta_36920
Conserved hypothetical protein.
  
 
   0.875
Rta_15240
Type 4 fimbrial biogenesis protein PilE-like protein.
 
  
 0.801
Rta_19820
Candidate type 4 fimbrial biogenesis protein PilZ.
  
   
 0.799
Rta_12340
Conserved hypothetical protein.
 
  
 0.788
Rta_18920
Type 4 fimbrial biogenesis protein PilF-like protein.
  
  
 0.786
pilA
Candidate type 4 fimbrial pilin protein.
 
  
 0.782
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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