Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_08010Hypothetical protein. (245 aa)    
Predicted Functional Partners:
aroK
Candidate shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.804
pilO
Candidate Tfp pilus assembly protein PilO.
 
     0.784
pilP
Candidate type IV pilus assembly protein PilP, putative lipoprotein of the pilotin family.
 
     0.784
pilN
Candidate Tfp pilus assembly protein PilN.
 
     0.775
pilM
Candidate type IV pilus assembly protein.
       0.746
pilQ
Candidate Fimbrial assembly protein pilQ precursor, secretin family.
       0.746
Rta_20540
PHA-depolymerases-like protein.
  
     0.640
Rta_08040
Candidate deoxyguanosinetriphosphate triphosphohydrolase (dGTPase); Belongs to the dGTPase family. Type 2 subfamily.
 
     0.639
Rta_15630
Candidate poly(3-hydroxybutyrate) depolymerase precursor (PHB depolymerase).
  
     0.565
aroB
Candidate 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
       0.536
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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