Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_08050Transporter-like protein. (402 aa)    
Predicted Functional Partners:
Rta_28980
Conserved hypothetical protein; Belongs to the UPF0246 family.
  
    0.824
aroB
Candidate 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
       0.781
Rta_08040
Candidate deoxyguanosinetriphosphate triphosphohydrolase (dGTPase); Belongs to the dGTPase family. Type 2 subfamily.
     
 0.779
Rta_08060
Hypothetical protein.
       0.668
Rta_08070
Conserved hypothetical protein.
       0.626
Rta_32450
Indolepyruvate ferredoxin oxidoreductase beta subunit-like protein.
  
     0.619
Rta_08080
Hypothetical protein.
       0.570
Rta_03100
Hypothetical protein.
  
     0.516
aroK
Candidate shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.509
Rta_32440
Indolepyruvate ferredoxin oxidoreductase alpha subunit-like protein.
  
     0.490
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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