Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_08280Conserved hypothetical protein; Belongs to the glucose-6-phosphate 1-epimerase family. (276 aa)    
Predicted Functional Partners:
pgi
Phosphohexose isomerase; Belongs to the GPI family.
  
 
 0.913
Rta_07340
N-acetylmannosamine kinase(ManNAc kinase)-like protein.
     
 0.901
zwf
Candidate glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
 
 
  0.840
Rta_37770
Candidate transketolase; Belongs to the transketolase family.
  
  
 0.836
tal
Candidate transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 
  0.826
eda
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase; Candidate bifunctional protein: 4-hydroxy-2-oxoglutarate aldolase (2-keto-4-hydroxyglutarate aldolase); 2- dehydro-3-deoxyphosphogluconate aldolase (Phospho-2- dehydro-3-deoxygluconate aldolase).
    
 0.820
Rta_11460
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
     
  0.800
Rta_31430
1-deoxy-D-xylulose-5-phosphate pyruvate-lyase (carboxylating).
     
  0.800
tkt
Conserved hypothetical protein.
     
  0.800
ttuD
Candidate hydroxypyruvate reductase.
     
  0.800
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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