Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Rta_08520Transcriptional regulator, LuxR family-like protein. (233 aa)    
Predicted Functional Partners:
Rta_08500
Candidate response regulator, atypical CheY.
 
   
 0.848
Rta_08510
Candidate histidine kinase, classic.
 
     0.747
vapC
Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.746
coaX
Bvg accessory factor-like protein; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.687
Rta_24290
Conserved hypothetical protein.
  
     0.686
Rta_38110
Phosphoglycolate phosphatase-like protein.
  
     0.662
dsbG
Candidate Thiol:disulfide interchange protein dsbG precursor.
  
     0.640
Rta_12910
Glycine-rich protein-like protein.
  
   
 0.636
Rta_20670
Conserved hypothetical protein.
    
 
 0.610
Rta_23820
General secretion pathway protein B-like protein.
  
     0.576
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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