Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_08600Conserved hypothetical protein. (122 aa)    
Predicted Functional Partners:
Rta_08590
Conserved hypothetical protein.
       0.787
Rta_08670
Conserved hypothetical protein.
 
     0.777
Rta_08610
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
       0.773
Rta_08580
Candidate molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.758
Rta_15340
Hypothetical protein.
  
     0.745
Rta_37460
Transcriptional regulator, MarR family-like protein.
  
     0.695
Rta_08650
Conserved hypothetical protein.
  
     0.694
Rta_31040
Conserved hypothetical protein.
  
     0.677
lolB
Candidate Outer-membrane lipoprotein lolB precursor; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
  
     0.667
Rta_31210
Conserved hypothetical protein.
 
     0.644
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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