Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_08650Conserved hypothetical protein. (257 aa)    
Predicted Functional Partners:
Rta_08660
Transcriptional regulator, TetR family-like protein.
 
 
   0.926
Rta_08670
Conserved hypothetical protein.
 
     0.886
htpG
Candidate heat shock protein, HSP90 family; Molecular chaperone. Has ATPase activity.
  
 0.764
Rta_18620
Glutaredoxin-like protein.
  
     0.742
Rta_00880
Conserved hypothetical protein.
    
 0.694
Rta_08600
Conserved hypothetical protein.
  
     0.694
alaS
Candidate alanyl-tRNA synthetase (Alanine--tRNA ligase); Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.681
rpoA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.670
Rta_23350
Candidate processive b-glycan synthase, Glycosyltransferase Family 2.
  
 
 0.666
Rta_01300
ATPase protein, AAA family-like protein.
  
 0.665
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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