Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_08740Conserved hypothetical protein. (414 aa)    
Predicted Functional Partners:
Rta_08730
Lipopolysaccharide transport system ATP-binding protein; Candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, ATP-binding component.
 
     0.816
Rta_08720
Transport permease protein; Candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, permease component.
 
     0.814
Rta_08750
A-glycosyltransferase, Glycosyltransferase Family 4-like protein.
      0.806
Rta_08760
Glycosyltransferase, Glycosyltransferase Family 46-like protein.
 
     0.799
rpmD
Candidate 50S ribosomal protein L30.
   
   0.699
rrmJ
Cell division protein ftsJ; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
   
  
 0.689
trmB
Candidate tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
 
 0.672
rumA
Candidate 23S rRNA (Uracil-5-)-methyltransferase rumA (23S rRNA(M- 5-U1939)-methyltransferase); Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
   
  
 0.630
Rta_08780
Candidate b-glycosyltransferase, Glycosyltransferase Family 2.
       0.508
Rta_08770
Candidate membrane protein.
       0.503
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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