Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Rta_08850Conserved hypothetical protein. (244 aa)    
Predicted Functional Partners:
Rta_08860
Hypothetical protein.
 
   
 0.953
Rta_08870
Conserved hypothetical protein.
 
     0.951
Rta_08880
ABC-2 type transport system ATP-binding protein; Candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, ATP-binding component.
 
   
 0.812
Rta_08890
ABC-2 type transport system permease protein; Candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, permease component.
 
   
 0.805
Rta_08840
Conserved hypothetical protein.
       0.793
ispF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase-like protein; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
  
  
 0.784
Rta_08900
Candidate b-glycosyltransferase, Glycosyltransferase Family 2.
       0.756
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.441
cmk
Deoxycytidine kinase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate; Belongs to the cytidylate kinase family. Type 1 subfamily.
     
 0.432
Rta_13670
Candidate bifunctional protein: chorismate mutase; prephenate dehydratase.
     
 0.418
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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