Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_08970Malate/L-lactate dehydrogenase-like protein; Belongs to the LDH2/MDH2 oxidoreductase family. (355 aa)    
Predicted Functional Partners:
dat
Candidate D-alanine aminotransferase.
   
  0.909
aatA
Candidate aspartate aminotransferase.
     
 0.909
aspC
Aspartate transaminase.
     
 0.905
dadA
Candidate D-amino acid dehydrogenase small subunit.
     
 0.901
dadA-2
Candidate D-amino acid dehydrogenase small subunit.
     
 0.901
Rta_05500
Candidate 4-hydroxyphenylpyruvate dioxygenase.
     
  0.900
hisC
Candidate Histidinol-phosphate aminotransferase 1; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.900
Rta_16440
Imidazole acetol- phosphate transaminase.
     
  0.900
garD
Candidate D-galactarate dehydratase.
       0.780
fumA
Candidate fumarate hydratase class I (Fumarase); Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.678
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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