Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
garDCandidate D-galactarate dehydratase. (504 aa)    
Predicted Functional Partners:
Rta_08970
Malate/L-lactate dehydrogenase-like protein; Belongs to the LDH2/MDH2 oxidoreductase family.
       0.780
dalD
Candidate D-arabinitol 4-dehydrogenase.
 
  
 0.550
Rta_09030
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
 
     0.509
Rta_09020
Transcriptional regulator, GntR family-like protein.
 
   
 0.507
dctM-2
Candidate small permease component.
 
     0.496
dctP-2
Candidate periplasmic component.
 
     0.473
Rta_25050
Conserved hypothetical protein.
 
   
 0.456
Rta_08967
Candidate membrane protein.
       0.411
Rta_17730
Gluconolactonase precursor-like protein.
 
   
 0.406
dctQ-2
Candidate large permease component.
       0.401
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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