Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_09020Transcriptional regulator, GntR family-like protein. (249 aa)    
Predicted Functional Partners:
dctP-2
Candidate periplasmic component.
     0.894
dctM-2
Candidate small permease component.
 
     0.818
Rta_11500
Transcriptional regulator, GntR family-like protein.
 
     0.769
dctQ-2
Candidate large permease component.
       0.768
Rta_12720
Transcriptional regulator, GntR family-like protein.
  
  
 0.751
Rta_18220
Transcriptional regulator, GntR family-like protein.
  
  
 0.739
Rta_11190
Transcriptional regulator, GntR family-like protein.
  
  
 0.738
Rta_14310
Transcriptional regulator, GntR family-like protein.
  
  
 0.726
Rta_09030
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
  
    0.548
Rta_09040
3-oxoacyl-[acyl-carrier-protein] reductase-like protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
    0.537
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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