Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_09030Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein. (248 aa)    
Predicted Functional Partners:
Rta_09040
3-oxoacyl-[acyl-carrier-protein] reductase-like protein; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
  
 
0.982
Rta_09050
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase-like protein.
 
 
  0.975
Rta_31380
Short-chain alcohol dehydrogenase of unknown specificity-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.703
Rta_27020
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.601
dctM-2
Candidate small permease component.
 
     0.591
dctQ-2
Candidate large permease component.
    
  0.575
Rta_09020
Transcriptional regulator, GntR family-like protein.
  
    0.548
Rta_13880
Oxidoreductases-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.531
dctP-2
Candidate periplasmic component.
       0.529
garD
Candidate D-galactarate dehydratase.
 
     0.509
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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