Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_09240RNA polymerase sigma-24 factor-like protein; Belongs to the sigma-70 factor family. (427 aa)    
Predicted Functional Partners:
Rta_09220
Conserved hypothetical protein.
 
    0.927
Rta_09200
Conserved hypothetical protein.
 
    0.872
Rta_09230
Conserved hypothetical protein.
 
     0.869
Rta_20790
Conserved hypothetical protein.
 
    0.790
Rta_01550
Conserved hypothetical protein.
 
    0.788
Rta_09250
Conserved hypothetical protein.
       0.773
Rta_14070
Hypothetical protein.
 
    0.772
Rta_09210
Conserved hypothetical protein.
       0.625
Rta_29550
Conserved hypothetical protein.
  
     0.474
Rta_06100
RNA polymerase sigma-24 factor-like protein; Belongs to the sigma-70 factor family.
  
   
 0.451
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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