Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_09310ATP-binding cassette, subfamily B, bacterial; Candidate ABC type transport system involved in Fe S cluster assembly, permease and ATPase components. (628 aa)    
Predicted Functional Partners:
Rta_09320
Candidate membrane protein.
       0.701
Rta_09300
Acyl-CoA thioester hydrolase-like protein.
       0.655
Rta_09330
Hypothetical protein.
       0.627
Rta_09350
Transcriptional regulator, LysR family-like protein; Belongs to the LysR transcriptional regulatory family.
       0.596
Rta_09340
Conserved hypothetical protein.
       0.591
Rta_01360
Candidate ABC type multidrug transport system, ATP-binding and permease components.
  
 
0.589
hemH
Heme synthetase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
   
 
 0.586
Rta_26260
Candidate ABC type multidrug transport system, ATP-binding and permease components.
  
 
0.580
msbA
Candidate ABC type multidrug transport system, ATP-binding and permease components; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 
0.575
Rta_14870
Candidate ABC type multidrug transport system, ATP-binding and permease components.
  
 
0.560
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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