Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
aspACandidate Aspartate ammonia-lyase. (469 aa)    
Predicted Functional Partners:
Rta_01470
L-asparaginase-like protein.
  
 
 0.948
Rta_21980
L-asparaginase (L-asparagine amidohydrolase)-like protein.
  
 
 0.948
Rta_27330
Aspartate racemase-like protein.
   
 0.921
Rta_14030
Aspartate racemase-like protein.
   
 0.914
argH
Candidate argininosuccinate lyase (Arginosuccinase).
     
0.910
nadB
Candidate L-aspartate oxidase (Quinolinate synthetase B); Catalyzes the oxidation of L-aspartate to iminoaspartate.
     
 0.910
purB
Candidate adenylosuccinate lyase (Adenylosuccinase); Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.910
purA
Candidate adenylosuccinate synthetase (IMP--aspartate ligase); Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
 0.906
aatA
Candidate aspartate aminotransferase.
    
 0.906
Rta_34230
Candidate asparagine synthetase (glutamine-hydrolyzing).
     
 0.906
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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