Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_09400Candidate ABC type amino acid transport system, ATP-binding component. (245 aa)    
Predicted Functional Partners:
Rta_09380
Candidate ABC type amino acid transport system, permease component.
 
 0.997
Rta_09390
Candidate ABC type amino acid transport system, permease component.
 0.997
Rta_09370
Candidate ABC type amino acid transport system, periplasmic component.
 
 0.991
Rta_05330
Candidate ABC type amino acid transport system, periplasmic component.
 
 0.965
Rta_05190
Candidate ABC type amino acid transport system, permease component.
 
 0.930
Rta_05180
Candidate ABC type amino acid transport system, permease component.
 
 
 0.921
Rta_05200
Candidate ABC type amino acid transport system, periplasmic component.
 
 
 0.823
gltB
Candidate Ferredoxin-dependent glutamate synthase.
  
  
 0.560
pyrC
Candidate Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
     
 0.513
Rta_09430
Conserved hypothetical protein.
       0.494
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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