Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_09490Conserved hypothetical protein. (180 aa)    
Predicted Functional Partners:
Rta_16710
Acetohydroxy-acid synthase small subunit; Belongs to the TPP enzyme family.
  
     0.739
Rta_04620
Conserved hypothetical protein.
  
     0.704
Rta_01500
Conserved hypothetical protein.
  
     0.607
Rta_21630
Gamma-butyrobetaine, 2-oxoglutarate dioxygenase (Gamma-butyrobetaine hydroxylase)-like protein.
  
     0.561
dapF
Candidate Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
       0.554
Rta_09510
Conserved hypothetical protein.
       0.554
xerC
Candidate site-specific recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.554
Rta_26750
Isoflavone reductase (NADPH:isoflavone oxidoreductase)-like protein.
 
     0.487
Rta_17710
Conserved hypothetical protein.
  
     0.469
Rta_00810
2-methylcitrate dehydratase-like protein.
  
     0.455
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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