Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_09570Conserved hypothetical protein. (668 aa)    
Predicted Functional Partners:
Rta_36950
Conserved hypothetical protein.
  
     0.772
Rta_18620
Glutaredoxin-like protein.
  
     0.753
Rta_11570
Conserved hypothetical protein.
  
     0.750
Rta_34130
Candidate histidine kinase, CheA.
  
   
 0.750
pilI-2
Candidate twitching motility protein, chemotaxis protein cheW.
  
     0.750
Rta_19690
Conserved hypothetical protein.
  
     0.742
Rta_28420
Conserved hypothetical protein.
  
   
 0.729
Rta_33230
Conserved hypothetical protein.
  
     0.725
Rta_34500
Candidate histidine kinase, classic.
  
 
   0.708
dksA
Conserved hypothetical protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
       0.705
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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