Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_10060Candidate ABC type branched chain amino acid transport systems, periplasmic component. (400 aa)    
Predicted Functional Partners:
Rta_10040
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.957
Rta_10050
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.949
Rta_10070
Candidate ABC type branched chain amino acid transport systems, ATP-binding component.
 
    0.933
Rta_10080
Candidate ABC type branched chain amino acid transport systems, ATP-binding component.
 
    0.912
Rta_10030
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
   
   0.627
Rta_20100
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.482
Rta_17010
Conserved hypothetical protein.
  
     0.479
Rta_20090
Candidate ABC type branched chain amino acid transport systems, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
    0.473
Rta_05940
Candidate transporter.
  
     0.471
Rta_20080
Candidate ABC type branched chain amino acid transport systems, ATP-binding component.
 
    0.454
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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