Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
icmFCandidate methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly. (1097 aa)    
Predicted Functional Partners:
Rta_18230
Candidate methylmalonyl-CoA mutase.
 
 
0.996
Rta_18240
Candidate LAO/AO transport system kinase.
 
 
0.981
Rta_09140
Unsaturated acyl-CoA hydratase.
 
  
 0.641
Rta_16360
Candidate ABC transporter probably involved in cobalamin transport, periplasmic component.
 
  
 0.635
Rta_30045
Conserved hypothetical protein.
 
   
 0.609
Rta_18250
Candidate propionyl-CoA carboxylase.
 
  
 0.603
Rta_20050
3-hydroxybutyryl-CoA epimerase-like protein.
  
  
 0.581
sucD
Candidate succinyl-CoA synthetase alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
 
   
 0.576
Rta_16390
Candidate ABC transporter probably involved in cobalamin transport, periplasmic component.
 
  
 0.571
Rta_36990
Candidate indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
  
  
 0.568
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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