Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
fcbT2Candidate small permease component. (204 aa)    
Predicted Functional Partners:
fcbT3
Candidate large permease component.
 
  
 0.957
fcbT1
Candidate periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.904
fcbT3-2
Candidate large permease component.
 
  
 0.817
Rta_13110
TRAP-T mannitol/chloroaromatic compound transport system, periplasmic component-like protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.792
fcbT1-2
Candidate periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.791
icmF
Candidate methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
       0.513
fcbT3-3
Candidate large permease component.
  
 0.474
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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