Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_10265Candidate response regulator, NarL. (206 aa)    
Predicted Functional Partners:
Rta_19270
Candidate histidine kinase, classic.
 
 
 0.897
Rta_18740
Candidate histidine kinase, hybrid.
 
 
 0.859
Rta_03470
Candidate histidine kinase, classic.
 
 
 0.848
Rta_30850
Candidate histidine kinase, classic.
 
 
 0.840
Rta_24940
Candidate histidine kinase, unorthodox.
  
 
 0.790
Rta_19460
Candidate histidine kinase, atypical hybrid.
  
 
 0.701
trpS
Candidate tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase); Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.633
Rta_33830
Candidate histidine kinase, unorthodox.
   
 
 0.633
Rta_10760
Candidate transcriptional regulator EpsA, LuxR family.
  
     0.628
Rta_10280
Candidate membrane protein.
  
  
 0.611
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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