Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_10410Hypothetical protein. (307 aa)    
Predicted Functional Partners:
Rta_01300
ATPase protein, AAA family-like protein.
   
 0.688
Rta_10420
Hydrolases-like protein.
       0.535
hisS
Candidate histidyl-tRNA synthetase (Histidine--tRNA ligase).
    
  0.535
Rta_29720
Candidate translocation protein in type III secretion, membrane protein.
    
   0.470
hscA
Candidate chaperone, Hsp70 (DnaK) family; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.
   
 
 0.445
dnaK
Candidate heat shock protein, HSP70 family; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.445
Rta_28350
Chaperone protein-like protein.
   
 
 0.445
Rta_23560
Candidate glycerol uptake facilitator or water-selective channels; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.439
Rta_16570
Hypothetical protein.
   
 
 0.438
dnaJ
Candidate heat shock protein J; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between [...]
   
 
 0.438
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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