Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_10420Hydrolases-like protein. (300 aa)    
Predicted Functional Partners:
Rta_30410
Polyketide synthase-like protein.
  
 0.654
Rta_02930
Conserved hypothetical protein.
  
     0.644
Rta_10430
Acetyl-CoA synthase (Acetate thiokinase).
       0.566
Rta_10410
Hypothetical protein.
       0.535
Rta_36560
Conserved hypothetical protein.
  
     0.475
Rta_08630
Candidate Acyl-CoA-binding protein.
  
 
  0.462
Rta_05520
Conserved hypothetical protein.
  
    0.444
Rta_34330
Conserved hypothetical protein.
  
     0.429
dsbB
Candidate disulfide oxidoreductase, membrane protein; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.
  
  
 0.414
Rta_26880
Conserved hypothetical protein.
  
     0.410
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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