Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_10450Oxidoreductases-like protein. (357 aa)    
Predicted Functional Partners:
Rta_10460
Conserved hypothetical protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.791
plsY
Candidate membrane protein; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
       0.749
Rta_10440
DNA-formamidopyrimidine glycosylase-like protein.
       0.560
Rta_23800
Conserved hypothetical protein.
 
 
 0.546
bkdA1
Candidate 2-oxoisovalerate dehydrogenase, alpha subunit.
  
  
 0.450
Rta_23560
Candidate glycerol uptake facilitator or water-selective channels; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.420
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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