Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
bkdA1Candidate 2-oxoisovalerate dehydrogenase, alpha subunit. (412 aa)    
Predicted Functional Partners:
bkdA2
Candidate 2-oxoisovalerate dehydrogenase, beta subunit.
 0.999
bkdB
Candidate Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex.
 
 0.998
pdhB
Candidate pyruvate dehydrogenase E1 component, beta subunit.
 0.998
lpd
Dihydrolipoamide dehydrogenase.
 
 
 0.996
Rta_18700
Candidate dihydrolipoyl dehydrogenase (Dihydrolipoamide dehydrogenase).
  
 0.994
bcat
Candidate Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.963
Rta_18810
Dihydrolipoamide dehydrogenase.
 
 
 0.961
sucB
Dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
 
 0.851
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
 
 0.845
Rta_01290
Candidate Threonine dehydratase catabolic (Threonine deaminase).
     
 0.808
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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