Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_10790Polysaccharide export protein-like protein. (283 aa)    
Predicted Functional Partners:
Rta_10800
Conserved hypothetical protein.
 
 
 0.998
Rta_10810
Conserved hypothetical protein.
 
 
 0.958
Rta_10770
Candidate sugar-1-phosphate transferase, membrane protein.
 
  
 0.929
Rta_10780
Hypothetical protein.
 
     0.910
Rta_08730
Lipopolysaccharide transport system ATP-binding protein; Candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, ATP-binding component.
  
  
 0.826
Rta_08880
ABC-2 type transport system ATP-binding protein; Candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, ATP-binding component.
  
  
 0.826
Rta_28290
Candidate sugar-1-phosphate transferase, membrane protein.
 
  
 0.758
Rta_10820
B-glycosyltransferase, Glycosyltransferase Family 26-like protein; Belongs to the glycosyltransferase 26 family.
 
   
 0.753
Rta_08720
Transport permease protein; Candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, permease component.
  
  
 0.745
Rta_08890
ABC-2 type transport system permease protein; Candidate ABC type polysaccharide/polyol phosphate export systems that might be involved in cell envelope biogenesis, permease component.
  
  
 0.745
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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