Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_10800Conserved hypothetical protein. (467 aa)    
Predicted Functional Partners:
Rta_10790
Polysaccharide export protein-like protein.
 
 
 0.998
Rta_10810
Conserved hypothetical protein.
  
 0.968
Rta_10780
Hypothetical protein.
 
   
 0.916
Rta_10770
Candidate sugar-1-phosphate transferase, membrane protein.
 
  
 0.901
Rta_10820
B-glycosyltransferase, Glycosyltransferase Family 26-like protein; Belongs to the glycosyltransferase 26 family.
 
   
 0.769
Rta_10900
Candidate succinoglycan transport protein.
 
  
 0.630
Rta_28290
Candidate sugar-1-phosphate transferase, membrane protein.
 
  
 0.627
Rta_08965
Polysaccharide deacetylase, carbohydrate Esterase Family 4-like protein.
 
   
 0.516
Rta_14900
Conserved hypothetical protein.
  
     0.513
Rta_10760
Candidate transcriptional regulator EpsA, LuxR family.
 
 
   0.485
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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