Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_10840Oxidoreductases-like protein. (561 aa)    
Predicted Functional Partners:
Rta_27710
Alcohol dehydrogenase cytochrome c subunit precursor-like protein.
 
 
 0.805
Rta_10850
A-glycosyltransferase, Glycosyltransferase Family 4-like protein.
  
    0.777
Rta_10830
UDP- galactose 4-epimerase.
 
   
 0.714
Rta_11600
Choline dehydrogenase and related flavoprotein-like protein.
  
     0.633
Rta_10860
Candidate b-glycosyltransferase, Glycosyltransferase Family 2.
       0.631
Rta_11590
Conserved hypothetical protein.
 
 
 0.622
Rta_06290
Conserved hypothetical protein.
 
 
 0.621
Rta_10900
Candidate succinoglycan transport protein.
     
 0.472
Rta_10870
Candidate b-glycosyltransferase, Glycosyltransferase Family 2.
       0.458
Rta_10880
Candidate b-glycosyltransferase, Glycosyltransferase Family 2.
       0.458
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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