Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_10970Candidate LPS heptosyltransferase, Glycosyltransferase Family 9. (347 aa)    
Predicted Functional Partners:
Rta_01890
Candidate LPS heptosyltransferase, Glycosyltransferase Family 9.
 
 0.994
Rta_10980
Candidate KDO transferase, Glycosyltransferase Family 30; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
  
 0.992
Rta_21120
Candidate membrane protein.
 
 
 0.941
Rta_10890
Candidate membrane protein.
  
 
 0.910
Rta_13600
ADP-heptose synthase-like protein.
 
   
 0.831
Rta_37130
Candidate Aut protein (necessary for autotrophic growth); Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
 
   
 0.816
Rta_10960
Phosphomannomutase/phosphoglucomutase-like protein.
  
  
 0.706
Rta_05570
Histidinol phosphatase-like protein.
 
   
 0.693
Rta_33320
Ferredoxin-like protein.
  
   0.680
gmhA
Candidate Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
 
   
 0.658
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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