Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_11100Hypothetical protein. (170 aa)    
Predicted Functional Partners:
Rta_11080
Candidate ABC transporter, permease component.
 
     0.915
Rta_11070
Candidate ABC transporter, ATP-binding component.
 
  
 0.857
Rta_11110
Hypothetical protein.
       0.729
Rta_11090
Hypothetical protein.
       0.688
dsbG
Candidate Thiol:disulfide interchange protein dsbG precursor.
  
     0.650
msrA
Candidate peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.640
Rta_11570
Conserved hypothetical protein.
  
     0.633
Rta_14740
Candidate transporter.
  
     0.631
Rta_24890
Conserved hypothetical protein.
  
     0.624
Rta_28840
Conserved hypothetical protein.
  
     0.574
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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