Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_112602-dehydro-3-deoxy-D-gluconate 5-dehydrogenase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein. (250 aa)    
Predicted Functional Partners:
Rta_11270
Conserved hypothetical protein.
 
   
 0.839
Rta_11250
Fructokinase-like protein.
   
 
 0.791
Rta_17220
3-oxoacyl-[acyl-carrier protein] reductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
  
     0.769
Rta_31380
Short-chain alcohol dehydrogenase of unknown specificity-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.760
Rta_27020
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.710
Rta_00790
Candidate oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.689
Rta_11240
Conserved hypothetical protein.
       0.686
Rta_13880
Oxidoreductases-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.668
Rta_25680
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.655
Rta_11230
D-3-phosphoglycerate dehydrogenase (Phosphoglycerate dehydrogenase)-like protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
   0.643
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
Server load: low (16%) [HD]