Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_11280Candidate isoquinoline 1-oxidoreductase, alpha subunit. (152 aa)    
Predicted Functional Partners:
Rta_11290
Isoquinoline 1-oxidoreductase, beta subunit-like protein.
 
 0.995
Rta_01170
Candidate Carbon monoxide dehydrogenase large chain.
 
 0.949
Rta_03670
Candidate Xanthine dehydrogenase.
 
 0.938
yagR
Candidate Xanthine dehydrogenase yagR, molybdenum binding subunit.
 
 0.938
Rta_32390
Candidate xanthine dehydrogenase large subunit.
 
     0.937
Rta_13380
Candidate carbon monoxide dehydrogenase large chain.
 
 0.911
Rta_11300
Conserved hypothetical protein.
 
  
 0.870
Rta_32790
Candidate ABC type branched chain amino acid transport systems, periplasmic component.
   
    0.852
Rta_13440
Conserved hypothetical protein.
 
  
 0.828
tctC-47
Candidate extracytoplasmic binding receptor.
   
    0.822
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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