Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
eda2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase; Candidate bifunctional protein: 4-hydroxy-2-oxoglutarate aldolase (2-keto-4-hydroxyglutarate aldolase); 2- dehydro-3-deoxyphosphogluconate aldolase (Phospho-2- dehydro-3-deoxygluconate aldolase). (214 aa)    
Predicted Functional Partners:
edd
Candidate phosphogluconate dehydratase (6-phosphogluconate dehydratase); Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
 
 0.997
Rta_11250
Fructokinase-like protein.
 
 
 0.945
aceA
Isocitratase.
     
 0.908
glcD
Candidate glycolate oxidase subunit glcD.
   
 
 0.908
glcE
Candidate Glycolate oxidase subunit.
   
 
 0.907
gclF
Candidate Glycolate oxidase iron-sulfur subunit.
     
 0.905
glcB
Candidate Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
     
 0.905
Rta_06660
D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein.
    
  0.902
tkrA-2
Candidate 2-ketogluconate reductase (Gluconate 2-dehydrogenase); Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.902
Rta_05390
Aminotransferase-like protein.
     
  0.900
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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