Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rta_114702- oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase. (213 aa)    
Predicted Functional Partners:
Rta_11480
2-oxo-3-deoxygalactonate kinase.
 
 
 0.996
eda
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase; Candidate bifunctional protein: 4-hydroxy-2-oxoglutarate aldolase (2-keto-4-hydroxyglutarate aldolase); 2- dehydro-3-deoxyphosphogluconate aldolase (Phospho-2- dehydro-3-deoxygluconate aldolase).
  
  
 
0.851
ilvD-2
Candidate dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
  
 0.834
Rta_11460
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)-like protein.
     
 0.777
Rta_11540
2- oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.739
edd
Candidate phosphogluconate dehydratase (6-phosphogluconate dehydratase); Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
  
 0.686
Rta_05230
Candidate 2-dehydro-3-deoxygluconokinase.
 
  
 0.661
Rta_11500
Transcriptional regulator, GntR family-like protein.
 
   
 0.642
Rta_12390
2- oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase.
 
   
 0.635
Rta_11250
Fructokinase-like protein.
 
  
 0.611
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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