Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_11500Transcriptional regulator, GntR family-like protein. (251 aa)    
Predicted Functional Partners:
dctM-4
Candidate small permease component.
 
     0.806
Rta_11540
2- oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
   
 0.786
Rta_09020
Transcriptional regulator, GntR family-like protein.
 
     0.769
Rta_12720
Transcriptional regulator, GntR family-like protein.
  
  
 0.753
dctQ-4
Candidate large permease component.
       0.752
Rta_11480
2-oxo-3-deoxygalactonate kinase.
 
  
 0.738
Rta_00830
Transcriptional regulator, GntR family-like protein.
  
  
 0.727
Rta_16250
Transcriptional regulator, GntR family-like protein.
  
  
 0.720
Rta_16170
Transcriptional regulator, GntR family-like protein.
  
  
 0.694
Rta_11190
Transcriptional regulator, GntR family-like protein.
  
  
 0.689
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.