Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rta_11500 | Rta_11540 | Rta_11500 | Rta_11540 | Transcriptional regulator, GntR family-like protein. | 2- oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 0.780 |
Rta_11500 | Rta_11550 | Rta_11500 | Rta_11550 | Transcriptional regulator, GntR family-like protein. | Conserved hypothetical protein. | 0.607 |
Rta_11500 | dctM-4 | Rta_11500 | Rta_11510 | Transcriptional regulator, GntR family-like protein. | Candidate small permease component. | 0.807 |
Rta_11500 | dctP-4 | Rta_11500 | Rta_11530 | Transcriptional regulator, GntR family-like protein. | Candidate periplasmic component. | 0.671 |
Rta_11500 | dctQ-4 | Rta_11500 | Rta_11520 | Transcriptional regulator, GntR family-like protein. | Candidate large permease component. | 0.753 |
Rta_11540 | Rta_11500 | Rta_11540 | Rta_11500 | 2- oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Transcriptional regulator, GntR family-like protein. | 0.780 |
Rta_11540 | Rta_11550 | Rta_11540 | Rta_11550 | 2- oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Conserved hypothetical protein. | 0.773 |
Rta_11540 | dctM-4 | Rta_11540 | Rta_11510 | 2- oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Candidate small permease component. | 0.712 |
Rta_11540 | dctP-4 | Rta_11540 | Rta_11530 | 2- oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Candidate periplasmic component. | 0.757 |
Rta_11540 | dctQ-4 | Rta_11540 | Rta_11520 | 2- oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Candidate large permease component. | 0.625 |
Rta_11550 | Rta_11500 | Rta_11550 | Rta_11500 | Conserved hypothetical protein. | Transcriptional regulator, GntR family-like protein. | 0.607 |
Rta_11550 | Rta_11540 | Rta_11550 | Rta_11540 | Conserved hypothetical protein. | 2- oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 0.773 |
Rta_11550 | dctM-4 | Rta_11550 | Rta_11510 | Conserved hypothetical protein. | Candidate small permease component. | 0.623 |
Rta_11550 | dctP-4 | Rta_11550 | Rta_11530 | Conserved hypothetical protein. | Candidate periplasmic component. | 0.757 |
Rta_11550 | dctQ-4 | Rta_11550 | Rta_11520 | Conserved hypothetical protein. | Candidate large permease component. | 0.623 |
dctM-3 | dctP-2 | Rta_11200 | Rta_09010 | Candidate small permease component. | Candidate periplasmic component. | 0.813 |
dctM-3 | dctP-3 | Rta_11200 | Rta_11220 | Candidate small permease component. | Candidate periplasmic component. | 0.938 |
dctM-3 | dctP-4 | Rta_11200 | Rta_11530 | Candidate small permease component. | Candidate periplasmic component. | 0.816 |
dctM-3 | dctP-6 | Rta_11200 | Rta_14710 | Candidate small permease component. | Candidate periplasmic component. | 0.817 |
dctM-3 | dctP-9 | Rta_11200 | Rta_29480 | Candidate small permease component. | Candidate periplasmic component. | 0.800 |
page 1 of 3