Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rta_11590Conserved hypothetical protein. (260 aa)    
Predicted Functional Partners:
Rta_11600
Choline dehydrogenase and related flavoprotein-like protein.
 0.997
Rta_06280
Candidate oxidoreductase.
 0.987
Rta_05230
Candidate 2-dehydro-3-deoxygluconokinase.
   
 
 0.911
tkrA-2
Candidate 2-ketogluconate reductase (Gluconate 2-dehydrogenase); Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.907
Rta_17730
Gluconolactonase precursor-like protein.
     
 0.905
Rta_06290
Conserved hypothetical protein.
  
  
 
0.904
idnK
Candidate thermosensitive gluconokinase (Gluconate kinase 1).
     
 0.904
purL
Candidate phosphoribosylformylglycinamidine synthase (FGAM synthase); Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
  
 0.845
Rta_11610
Hypothetical protein.
       0.773
Rta_27710
Alcohol dehydrogenase cytochrome c subunit precursor-like protein.
 
  
 0.665
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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