Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Rta_11750Candidate Co/Zn/Cd cation transporter. (209 aa)    
Predicted Functional Partners:
Rta_11760
Hypothetical protein.
       0.628
Rta_28890
Candidate cation transport ATPase.
  
  
 0.613
Rta_37660
Conserved hypothetical protein.
  
    0.565
Rta_11770
Candidate membrane protein, related to efflux protein.
     
 0.543
Rta_11780
2-keto-4-pentenoate hydratase-like protein.
       0.535
Rta_28880
Transcriptional regulator, MerR family-like protein.
 
   
 0.468
Rta_23570
Arsenate reductase (Arsenical pump modifier)-like protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
   
 0.420
Rta_12890
Candidate metal transporter.
   
 0.406
Rta_30190
Hypothetical protein.
   
 0.406
Your Current Organism:
Ramlibacter tataouinensis
NCBI taxonomy Id: 365046
Other names: Acidivorax sp. TTB310, Acidovorax sp. TTB310, R. tataouinensis TTB310, Ramlibacter tataouinensis TTB310, Ramlibacter tataouinensis str. TTB310, Ramlibacter tataouinensis strain TTB310
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